179 research outputs found
Distance Metric Learning using Graph Convolutional Networks: Application to Functional Brain Networks
Evaluating similarity between graphs is of major importance in several
computer vision and pattern recognition problems, where graph representations
are often used to model objects or interactions between elements. The choice of
a distance or similarity metric is, however, not trivial and can be highly
dependent on the application at hand. In this work, we propose a novel metric
learning method to evaluate distance between graphs that leverages the power of
convolutional neural networks, while exploiting concepts from spectral graph
theory to allow these operations on irregular graphs. We demonstrate the
potential of our method in the field of connectomics, where neuronal pathways
or functional connections between brain regions are commonly modelled as
graphs. In this problem, the definition of an appropriate graph similarity
function is critical to unveil patterns of disruptions associated with certain
brain disorders. Experimental results on the ABIDE dataset show that our method
can learn a graph similarity metric tailored for a clinical application,
improving the performance of a simple k-nn classifier by 11.9% compared to a
traditional distance metric.Comment: International Conference on Medical Image Computing and
Computer-Assisted Interventions (MICCAI) 201
Spectral Graph Convolutions for Population-based Disease Prediction
Exploiting the wealth of imaging and non-imaging information for disease
prediction tasks requires models capable of representing, at the same time,
individual features as well as data associations between subjects from
potentially large populations. Graphs provide a natural framework for such
tasks, yet previous graph-based approaches focus on pairwise similarities
without modelling the subjects' individual characteristics and features. On the
other hand, relying solely on subject-specific imaging feature vectors fails to
model the interaction and similarity between subjects, which can reduce
performance. In this paper, we introduce the novel concept of Graph
Convolutional Networks (GCN) for brain analysis in populations, combining
imaging and non-imaging data. We represent populations as a sparse graph where
its vertices are associated with image-based feature vectors and the edges
encode phenotypic information. This structure was used to train a GCN model on
partially labelled graphs, aiming to infer the classes of unlabelled nodes from
the node features and pairwise associations between subjects. We demonstrate
the potential of the method on the challenging ADNI and ABIDE databases, as a
proof of concept of the benefit from integrating contextual information in
classification tasks. This has a clear impact on the quality of the
predictions, leading to 69.5% accuracy for ABIDE (outperforming the current
state of the art of 66.8%) and 77% for ADNI for prediction of MCI conversion,
significantly outperforming standard linear classifiers where only individual
features are considered.Comment: International Conference on Medical Image Computing and
Computer-Assisted Interventions (MICCAI) 201
Cold and Slow Molecular Beam
Employing a two-stage cryogenic buffer gas cell, we produce a cold,
hydrodynamically extracted beam of calcium monohydride molecules with a near
effusive velocity distribution. Beam dynamics, thermalization and slowing are
studied using laser spectroscopy. The key to this hybrid, effusive-like beam
source is a "slowing cell" placed immediately after a hydrodynamic, cryogenic
source [Patterson et al., J. Chem. Phys., 2007, 126, 154307]. The resulting CaH
beams are created in two regimes. One modestly boosted beam has a forward
velocity of vf = 65 m/s, a narrow velocity spread, and a flux of 10^9 molecules
per pulse. The other has the slowest forward velocity of vf = 40 m/s, a
longitudinal temperature of 3.6 K, and a flux of 5x10^8 molecules per pulse
Franck-Condon Factors and Radiative Lifetime of the A^{2}\Pi_{1/2} - X^{2}\Sigma^{+} Transition of Ytterbium Monoflouride, YbF
The fluorescence spectrum resulting from laser excitation of the
A^{2}\Pi_{1/2} - X^{2}\Sigma^{+} (0,0) band of ytterbium monofluoride, YbF, has
been recorded and analyzed to determine the Franck-Condon factors. The measured
values are compared with those predicted from Rydberg-Klein-Rees (RKR)
potential energy curves. From the fluorescence decay curve the radiative
lifetime of the A^{2}\Pi_{1/2} state is measured to be 28\pm2 ns, and the
corresponding transition dipole moment is 4.39\pm0.16 D. The implications for
laser cooling YbF are discussed.Comment: 5 pages, 5 figure
Laser cooling of a diatomic molecule
It has been roughly three decades since laser cooling techniques produced
ultracold atoms, leading to rapid advances in a vast array of fields.
Unfortunately laser cooling has not yet been extended to molecules because of
their complex internal structure. However, this complexity makes molecules
potentially useful for many applications. For example, heteronuclear molecules
possess permanent electric dipole moments which lead to long-range, tunable,
anisotropic dipole-dipole interactions. The combination of the dipole-dipole
interaction and the precise control over molecular degrees of freedom possible
at ultracold temperatures make ultracold molecules attractive candidates for
use in quantum simulation of condensed matter systems and quantum computation.
Also ultracold molecules may provide unique opportunities for studying chemical
dynamics and for tests of fundamental symmetries. Here we experimentally
demonstrate laser cooling of the molecule strontium monofluoride (SrF). Using
an optical cycling scheme requiring only three lasers, we have observed both
Sisyphus and Doppler cooling forces which have substantially reduced the
transverse temperature of a SrF molecular beam. Currently the only technique
for producing ultracold molecules is by binding together ultracold alkali atoms
through Feshbach resonance or photoassociation. By contrast, different proposed
applications for ultracold molecules require a variety of molecular
energy-level structures. Our method provides a new route to ultracold
temperatures for molecules. In particular it bridges the gap between ultracold
temperatures and the ~1 K temperatures attainable with directly cooled
molecules (e.g. cryogenic buffer gas cooling or decelerated supersonic beams).
Ultimately our technique should enable the production of large samples of
molecules at ultracold temperatures for species that are chemically distinct
from bialkalis.Comment: 10 pages, 7 figure
Edge-variational Graph Convolutional Networks for Uncertainty-aware Disease Prediction
There is a rising need for computational models that can complementarily
leverage data of different modalities while investigating associations between
subjects for population-based disease analysis. Despite the success of
convolutional neural networks in representation learning for imaging data, it
is still a very challenging task. In this paper, we propose a generalizable
framework that can automatically integrate imaging data with non-imaging data
in populations for uncertainty-aware disease prediction. At its core is a
learnable adaptive population graph with variational edges, which we
mathematically prove that it is optimizable in conjunction with graph
convolutional neural networks. To estimate the predictive uncertainty related
to the graph topology, we propose the novel concept of Monte-Carlo edge
dropout. Experimental results on four databases show that our method can
consistently and significantly improve the diagnostic accuracy for Autism
spectrum disorder, Alzheimer's disease, and ocular diseases, indicating its
generalizability in leveraging multimodal data for computer-aided diagnosis.Comment: Accepted to MICCAI 202
Learning Graph-Convolutional Representations for Point Cloud Denoising
Point clouds are an increasingly relevant data type but they are often
corrupted by noise. We propose a deep neural network based on
graph-convolutional layers that can elegantly deal with the
permutation-invariance problem encountered by learning-based point cloud
processing methods. The network is fully-convolutional and can build complex
hierarchies of features by dynamically constructing neighborhood graphs from
similarity among the high-dimensional feature representations of the points.
When coupled with a loss promoting proximity to the ideal surface, the proposed
approach significantly outperforms state-of-the-art methods on a variety of
metrics. In particular, it is able to improve in terms of Chamfer measure and
of quality of the surface normals that can be estimated from the denoised data.
We also show that it is especially robust both at high noise levels and in
presence of structured noise such as the one encountered in real LiDAR scans.Comment: European Conference on Computer Vision (ECCV) 202
The emergence of waves in random discrete systems
Essential criteria for the emergence of wave-like manifestations occurring in an entirely discrete system are identified using a simple model for the movement of particles through a network. The dynamics are entirely stochastic and memoryless involving a birth-death-migration process. The requirements are that the network should have at least three nodes, that migration should have a directional bias, and that the particle dynamics have a non-local dependence. Well defined bifurcations mark transitions between amorphous, wave-like and collapsed states with an intermittent regime between the latter two
Interpretation of Brain Morphology in Association to Alzheimer's Disease Dementia Classification Using Graph Convolutional Networks on Triangulated Meshes
We propose a mesh-based technique to aid in the classification of Alzheimer's
disease dementia (ADD) using mesh representations of the cortex and subcortical
structures. Deep learning methods for classification tasks that utilize
structural neuroimaging often require extensive learning parameters to
optimize. Frequently, these approaches for automated medical diagnosis also
lack visual interpretability for areas in the brain involved in making a
diagnosis. This work: (a) analyzes brain shape using surface information of the
cortex and subcortical structures, (b) proposes a residual learning framework
for state-of-the-art graph convolutional networks which offer a significant
reduction in learnable parameters, and (c) offers visual interpretability of
the network via class-specific gradient information that localizes important
regions of interest in our inputs. With our proposed method leveraging the use
of cortical and subcortical surface information, we outperform other machine
learning methods with a 96.35% testing accuracy for the ADD vs. healthy control
problem. We confirm the validity of our model by observing its performance in a
25-trial Monte Carlo cross-validation. The generated visualization maps in our
study show correspondences with current knowledge regarding the structural
localization of pathological changes in the brain associated to dementia of the
Alzheimer's type.Comment: Accepted for the Shape in Medical Imaging (ShapeMI) workshop at
MICCAI International Conference 202
The Buffer Gas Beam: An Intense, Cold, and Slow Source for Atoms and Molecules
Beams of atoms and molecules are stalwart tools for spectroscopy and studies
of collisional processes. The supersonic expansion technique can create cold
beams of many species of atoms and molecules. However, the resulting beam is
typically moving at a speed of 300-600 m/s in the lab frame, and for a large
class of species has insufficient flux (i.e. brightness) for important
applications. In contrast, buffer gas beams can be a superior method in many
cases, producing cold and relatively slow molecules in the lab frame with high
brightness and great versatility. There are basic differences between
supersonic and buffer gas cooled beams regarding particular technological
advantages and constraints. At present, it is clear that not all of the
possible variations on the buffer gas method have been studied. In this review,
we will present a survey of the current state of the art in buffer gas beams,
and explore some of the possible future directions that these new methods might
take
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